CHEM404/604 – Introduction to Computational Chemistry

Course Outline

Section 1. The Computational Toolbox 

1.1 What is computational chemistry? 

Areas of application

Examples of combining experimental and computational work

Computational quantities: structure and chemical properties (“single molecule” properties, thermodynamic quantities, and non-observables)

1.2 What are calculations doing?

Potential energy surfaces (PES)

1.3.      Chemically interesting stationary points on a PES

Local and global minima

Local and global maxima

Nth-order saddle points

Important stationary points along the PES of a chemical system and a chemical reaction.

Geometry optimizations: The energy gradient

1.4.     Main types of calculations

Single-point energy calculations 

Geometry optimizations

Frequency calculations

The Hessian of energy

Mathematical definition and characterization of stationary points

Important data to be obtained from the different types of calculations

1.5.     Minimum input for calculations 

Minimum input for calculations: level of theory, basis sets, charge, multiplicity, molecular geometry

Level of theory

Molecular geometry: Cartesian coordinates and Z-matrices

Internal coordinates

Graphic interfaces

Number of electrons: Charge and multiplicity of a chemical system

Constructing the Z-matrix of any system

Dummy atoms: Applications

Basis sets: Basis functions frequently used in QM – STOs and GTOs

Effects of increasing the size of a basis set

Section 2. Quantum Chemistry for Electronic Structure Methods

2.1.      Historic background of quantum mechanics 

Differences between classical and quantum mechanics (QM)

Historic background of QM: Wave nature of light; Planck’s theory of quantization; dual wave-particle behavior of microparticles (De Broglie’s equation).

The Heisenberg uncertainty principle

2.2.      The wavefunction 

Postulate 1: The wavefunction (wf) or state function, Ψ

Characteristics of a well-behaved wf

Physical significance of Ψ

Probability density: Complex conjugates

Normalization condition

2.3.      Operators in quantum mechanics 

Postulate 2: Observables and QM operators

Operators and some properties (sum, product, commutation)

Evaluation of commutators

Operators in QM: linear momentum operators, the Hamiltonian operator.

2.4.      Eigenvalues and eigenvectors 

Eigenvalue equations: Eigenvalues and eigenvectors. 

Hermitian operators

Postulate 3: Measurement, observable, operator, eigenvalue

Consequence of operators that commute: Simultaneous specification of several exact properties

Postulate 4: Expectation (average) value

2.5.    The Schrödinger equation and the Hamiltonian of a molecule 

Postulate 5: The Schrödinger equation (time-dependent and time-independent versions)

The Hamiltonian (total energy) operator: expression for several systems (for a particle moving in one and three dimensions, for N particles moving in 3 dimensions)

The Hamiltonian operator of a molecule

The Born-Oppenheimer approximation

2.6.    The multielectron wavefunction and the Slater determinant 

Postulate 6: The multielectron wf is antisymmetric

Molecular orbital (MO) theory: Molecular orbitals, spin functions and spin orbitals

The Hartree product of spin orbitals

Slater determinants

The LCAO (linear combination of atomic orbitals) approximation

MOs as a linear combination of basis functions

2.7.      The Hartree-Fock (HF) theory

The HF approximation: Main features

The correlation energy

The HF equations: identification and understanding of every term

The self-consistent-field (SCF) method

The Roothaan-Hall Equations

Limitations of HF theory

2.7.      Other common levels of theory

Electron-correlation methods: CI, CCSD,….

Moller-Plesset Perturbation Theory: MP2, MP4

Density Functional Theory (DFT): Hohenberg-Kohn theorem, Kohn-Sham DFT